Offers a number of behavioral health, mental health and substance abuse services that are both trauma focused and strengths based. Services offered place a high emphasis on education, practice, and development of new skills to help individuals achieve goals.

The Clinical Services Program expands beyond the Home's youth to serve other youth and families in the community. Services open to the public:
-- Evaluations - Available for individuals who have been court ordered to receive an initial diagnostic interview or for those who need evaluated for mental health, behavioral health or substance abuse treatment.
-- Intensive Outpatient Program - A comprehensive, structured therapy program to help adolescents overcome substance abuse and mental health symptoms.
-- Outpatient Program - A treatment plan focusing on increasing strengths and resources to help individuals overcome mental health, substance abuse and co-occurring disorders.
-- Day Reporting - A comprehensive and strengths focused daily program for youth who are struggling in their current environment and are in need of additional structure and activity; located on Omaha Home for Boys campus.
-- Family Support - A skill building program for families and youth that helps enhance family functioning in the home and overall functioning in the community.
-- Intensive Family Preservation - Directed by a licensed therapist and experienced skill builder, this service offers therapy and skill building for families and youth.